Preheat the oven to 400 F. Mix together almond flour, chives, salt, and pepper, and place into a shallow dish.
Coat the flesh side of the salmon filet with mixture (if skin on), or just the side that will be faced straight up while baking (if not skin on).
Place sliced vegetables onto a baking sheet with fresh thyme, and lemon slices, followed by the salmon, with the coated side facing upwards. Drizzle olive oil over everything, and bake for 15- 20 minutes or until the fish and vegetables are fully cooked.